Initial commit of the AENET code.
Initial commit of the AENET code.
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INPUT FILE FORMAT FOR `GENERATE.X'
Nongnuch Artrith
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Table of Contents
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1 Alphabetic list of keywords
2 Input file template (generate.in)
3 Input file example (generate.in) for TiO_{2}
1 Alphabetic list of keywords
=============================
All keywords are case insensitive and independent of the order. Blank
lines and lines starting with `!', `#', or `%' are ignored.
`debug' (optional): Activate debugging mode; additional output will be
generated.
`files' (required): Specifies number of and path to reference structures
in the *ænet* XSF format. The first line following
the keyword contains the number `<NF>' of structure
files. Each of the `<NF>' following lines contains
a file system path.
`output' (optional): Defines the path to the training set file that is
going to be generated. The default name is
"refdata.train". Note that the training set file
is in a binary format and cannot be viewed by a
text editor. Depending on the number of reference
structures, the file can become very large (e.g., 1
GB).
`setups' (required): Specifies paths to structural fingerprint basis
function setup files. Each of the `<NT>' lines
following the keyword contains the chemical symbol
`<T_i>' and the path to the setup file for one
species.
`timing' (optional): Activate timing; additional output files will be
created.
`types' (required): Defines the number of atomic species, their names,
and atomic energies. The first line after the
keyword contains the number of different species
`<NT>'; the following `<NT>' lines each contain the
chemical symbol `<T_i>' and atomic energy
`<E_atom-i>' of one species.
2 Input file template (generate.in)
===================================
,----
| OUTPUT <path/to/output/file>
|
| TYPES
| <NT>
| <T_1> <E_atom-1>
| <T_2> <E_atom-2>
| ...
| <T_NT> <E_atom-NT>
|
| SETUPS
| <T_1> <path/to/setup-1>
| <T_2> <path/to/setup-2>
| ...
| <T_NT> <path/to/setup-NT>
|
| FILES
| <NF>
| <path/to/file-1.xsf>
| <path/to/file-2.xsf>
| ...
| <path/to/file-NF.xsf>
`----
3 Input file example (generate.in) for TiO_{2}
==============================================
,----
| OUTPUT TiO2.train
|
| TYPES
| 2
| O -432.503149303 ! eV
| Ti -1604.604515075 ! eV
|
| SETUPS
| O O.fingerprint.stp
| Ti Ti.fingerprint.stp
|
| FILES
| 7815
| ./structures/0001.xsf
| ./structures/0002.xsf
| ...
| ./structures/7815.xsf
`----