| 19-11-04 16:12 |
Marcelo Ponce |
updating citation to BMC RACS paper |
commitdiff tree tar/gz zip patch |
| 19-09-25 20:08 |
Marcelo Ponce |
Interaeractive (HTML) Scaling Analysis Plots |
commitdiff tree tar/gz zip patch |
| 19-09-20 22:28 |
Marcelo Ponce |
more markdown compatibility |
commitdiff tree tar/gz zip patch |
| 19-09-20 22:26 |
Marcelo Ponce |
backsticks for markdown compatibility |
commitdiff tree tar/gz zip patch |
| 19-09-20 22:24 |
Marcelo Ponce |
adding a section about the issues of multi-threads |
commitdiff tree tar/gz zip patch |
| 19-09-19 00:07 |
Marcelo Ponce |
interactive scaling analysis plot |
commitdiff tree tar/gz zip patch |
| 19-09-11 14:04 |
Marcelo Ponce |
RACS live performance plots |
commitdiff tree tar/gz zip patch |
| 19-09-11 13:59 |
Marcelo Ponce |
fixing axes and title |
commitdiff tree tar/gz zip patch |
| 19-09-11 13:54 |
Marcelo Ponce |
fixing axis |
commitdiff tree tar/gz zip patch |
| 19-09-10 21:10 |
Marcelo Ponce |
adding a 'doc' subdir to place documentation, adde |
commitdiff tree tar/gz zip patch |
| 19-08-24 21:10 |
Marcelo Ponce |
added template scripts for running RACS ORG and IG |
commitdiff tree tar/gz zip patch |
| 19-08-24 20:39 |
Marcelo Ponce |
considering the case of multiple arguments in the |
commitdiff tree tar/gz zip patch |
| 19-08-24 20:38 |
Marcelo Ponce |
changing exit --> return to avoid killing the term |
commitdiff tree tar/gz zip patch |
| 19-08-24 20:38 |
Marcelo Ponce |
clarifying some comments |
commitdiff tree tar/gz zip patch |
| 19-08-18 21:48 |
Marcelo Ponce |
adding an auxiliary script to monitor RACS process |
commitdiff tree tar/gz zip patch |
| 19-08-14 23:34 |
Marcelo Ponce |
setting the DBG flag in table.sh to be active when |
commitdiff tree tar/gz zip patch |
| 19-08-11 16:59 |
Marcelo Ponce |
typos and few clarifications in monitoring tool de |
commitdiff tree tar/gz zip patch |
| 19-08-10 18:14 |
Marcelo Ponce |
adding a 'usage' to the monitoring script |
commitdiff tree tar/gz zip patch |
| 19-07-24 23:01 |
Marcelo Ponce |
Important: a more general sorting alg. for the ref |
commitdiff tree tar/gz zip patch |
| 19-07-24 22:59 |
Marcelo Ponce |
IMPORTANT: making the IGR main alg more robust aga |
commitdiff tree tar/gz zip patch |
| 19-07-24 22:54 |
Marcelo Ponce |
adding a whole timer for the IGR main script |
commitdiff tree tar/gz zip patch |
| 19-07-23 20:22 |
Marcelo Ponce |
sonar not working, eliminating... |
commitdiff tree tar/gz zip patch |
| 19-07-23 20:20 |
Marcelo Ponce |
adding a sonar file to test sonar itnegration tool |
commitdiff tree tar/gz zip patch |
| 19-07-23 16:28 |
Marcelo Ponce |
uniform CITATION acroos the files |
commitdiff tree tar/gz zip patch |
| 19-07-23 16:24 |
Marcelo Ponce |
small fixes to README |
commitdiff tree tar/gz zip patch |
| 19-07-23 16:17 |
Marcelo Ponce |
minor clarification about citation |
commitdiff tree tar/gz zip patch |
| 19-07-23 16:15 |
Marcelo Ponce |
few clarifications in README as well as inclduing |
commitdiff tree tar/gz zip patch |
| 19-07-23 16:14 |
Marcelo Ponce |
adding arXiv record for RACS |
commitdiff tree tar/gz zip patch |
| 19-07-22 18:02 |
Marcelo Ponce |
adding an overview section and 'other dependencies |
commitdiff tree tar/gz zip patch |
| 19-07-22 16:56 |
Marcelo Ponce |
refernece to the new spreadsheets in datasets |
commitdiff tree tar/gz zip patch |
| 19-07-22 16:46 |
Marcelo Ponce |
removing the old ones |
commitdiff tree tar/gz zip patch |
| 19-07-22 16:44 |
Marcelo Ponce |
adding new spreadhsets to post-process and analyze |
commitdiff tree tar/gz zip patch |
| 19-07-22 16:33 |
Marcelo Ponce |
fixing names of files in exmaples |
commitdiff tree tar/gz zip patch |
| 19-07-22 16:05 |
Marcelo Ponce |
some corrections to README file *PLUS* a new sec |
commitdiff tree tar/gz zip patch |
| 19-07-20 20:19 |
Marcelo Ponce |
IMPORTANT: switching from 'a-la-grep' fitlering to |
commitdiff tree tar/gz zip patch |
| 19-07-20 20:16 |
Marcelo Ponce |
adding a LOG-fn to log output, also setting the WO |
commitdiff tree tar/gz zip patch |
| 19-07-19 19:58 |
Marcelo Ponce |
minor typo |
commitdiff tree tar/gz zip patch |
| 19-07-19 19:54 |
Marcelo Ponce |
clarifying examples, adding logging capabilites |
commitdiff tree tar/gz zip patch |
| 19-07-19 17:10 |
Marcelo Ponce |
one more defn file for TT using gened and mRNA |
commitdiff tree tar/gz zip patch |
| 19-07-19 17:08 |
Marcelo Ponce |
added processes display and checks for working spa |
commitdiff tree tar/gz zip patch |
| 19-07-19 13:54 |
Marcelo Ponce |
added 'secs' to the reported time |
commitdiff tree tar/gz zip patch |
| 19-07-19 13:53 |
Marcelo Ponce |
typo in helpme |
commitdiff tree tar/gz zip patch |
| 19-07-19 13:29 |
Marcelo Ponce |
added global timers to the main ORF script |
commitdiff tree tar/gz zip patch |
| 19-07-09 02:52 |
Marcelo Ponce |
minor rewording |
commitdiff tree tar/gz zip patch |
| 19-07-09 02:47 |
Marcelo Ponce |
.. -> ... as 'symbolic' generic path to RACS scrip |
commitdiff tree tar/gz zip patch |
| 19-07-09 02:41 |
Marcelo Ponce |
adding more explicit comments about how to run RAC |
commitdiff tree tar/gz zip patch |
| 19-07-09 02:34 |
Marcelo Ponce |
adding sections' separators |
commitdiff tree tar/gz zip patch |
| 19-07-09 02:24 |
Marcelo Ponce |
a funcier name to example IV.ii' |
commitdiff tree tar/gz zip patch |
| 19-07-09 02:21 |
Marcelo Ponce |
adding the example with oxy (arb. organism) and au |
commitdiff tree tar/gz zip patch |
| 19-07-09 01:31 |
Marcelo Ponce |
adding a high-level description of the 'comparison |
commitdiff tree tar/gz zip patch |
| 19-07-09 01:22 |
Marcelo Ponce |
adding the 7th argument for the ORF script |
commitdiff tree tar/gz zip patch |
| 19-07-09 01:04 |
Marcelo Ponce |
rewritting a little bit the countReads.sh for ORF, |
commitdiff tree tar/gz zip patch |
| 19-07-09 00:34 |
Marcelo Ponce |
adding the get_* scripts to the datsets sub-dir in |
commitdiff tree tar/gz zip patch |
| 19-07-09 00:31 |
Marcelo Ponce |
spell-checking README file |
commitdiff tree tar/gz zip patch |
| 19-07-08 13:53 |
Marcelo Ponce |
spell checking and adding names of scripts to the |
commitdiff tree tar/gz zip patch |
| 19-07-08 13:42 |
Marcelo Ponce |
removing the example ''III') normalization and cut |
commitdiff tree tar/gz zip patch |
| 19-07-08 13:14 |
Marcelo Ponce |
cleaning some innapropiate comments and referring |
commitdiff tree tar/gz zip patch |
| 19-07-08 13:09 |
Marcelo Ponce |
more details in the example for the comparison too |
commitdiff tree tar/gz zip patch |
| 19-07-08 13:06 |
Marcelo Ponce |
fixing indentation in DBG flags |
commitdiff tree tar/gz zip patch |
| 19-07-08 08:21 |
Marcelo Ponce |
a little bit more about the compare tool in the RE |
commitdiff tree tar/gz zip patch |
| 19-07-08 08:07 |
Marcelo Ponce |
cutting the documentation of compare.R |
commitdiff tree tar/gz zip patch |
| 19-07-08 08:06 |
Marcelo Ponce |
working in the 'compare' tool example |
commitdiff tree tar/gz zip patch |
| 19-07-08 07:46 |
Marcelo Ponce |
fixing documentation and comments of the compare.R |
commitdiff tree tar/gz zip patch |
| 19-07-08 07:23 |
Marcelo Ponce |
bug in logic of checking whether packages needed t |
commitdiff tree tar/gz zip patch |
| 19-07-08 06:49 |
Marcelo Ponce |
fixing capitalization of second name of organisms |
commitdiff tree tar/gz zip patch |
| 19-07-08 06:38 |
Marcelo Ponce |
fixing the names of the 'get_...' scripts |
commitdiff tree tar/gz zip patch |
| 19-07-07 21:59 |
Marcelo Ponce |
adding a full example of the analysis of the Oxytr |
commitdiff tree tar/gz zip patch |
| 19-07-07 20:44 |
Marcelo Ponce |
minor typo in README |
commitdiff tree tar/gz zip patch |
| 19-07-07 13:51 |
Marcelo Ponce |
example of the ORF for the Oxytrichia trifallax |
commitdiff tree tar/gz zip patch |
| 19-07-07 13:33 |
Marcelo Ponce |
adding examples for generating reference tables f |
commitdiff tree tar/gz zip patch |
| 19-07-04 20:00 |
Marcelo Ponce |
adding DOIs to references |
commitdiff tree tar/gz zip patch |
| 19-07-04 18:36 |
Marcelo Ponce |
adding detected RACS location to the welcome's out |
commitdiff tree tar/gz zip patch |
| 19-07-04 18:33 |
Marcelo Ponce |
updating references in the README |
commitdiff tree tar/gz zip patch |
| 19-07-03 19:41 |
Marcelo Ponce |
switching to absolute path for scriptsDIR ref. |
commitdiff tree tar/gz zip patch |
| 19-07-01 19:08 |
Marcelo Ponce |
minor fix in citation in readme; clarifying msgs i |
commitdiff tree tar/gz zip patch |
| 19-07-01 19:01 |
Marcelo Ponce |
Additional tools section added to README |
commitdiff tree tar/gz zip patch |
| 19-07-01 18:34 |
Marcelo Ponce |
adding a TOC to the README file and place holders |
commitdiff tree tar/gz zip patch |
| 19-07-01 18:23 |
Marcelo Ponce |
adding echoes to identifiy in whcih part of the pi |
commitdiff tree tar/gz zip patch |
| 19-07-01 17:22 |
Marcelo Ponce |
including RACS location in testing fn msg |
commitdiff tree tar/gz zip patch |
| 19-07-01 17:21 |
Marcelo Ponce |
clarifying msg about target organism |
commitdiff tree tar/gz zip patch |
| 19-07-01 17:20 |
Marcelo Ponce |
montioring tool: some msgs and allowing the DBG fl |
commitdiff tree tar/gz zip patch |
| 19-07-01 17:19 |
Marcelo Ponce |
setting absolute path acccross the aux function |
commitdiff tree tar/gz zip patch |
| 19-06-30 20:13 |
Marcelo Ponce |
fixing a bug for the scriptsDIR variable was defin |
commitdiff tree tar/gz zip patch |
| 19-06-30 20:10 |
Marcelo Ponce |
aesthetics improvements to racs_montior.sh |
commitdiff tree tar/gz zip patch |
| 19-06-30 18:26 |
Marcelo Ponce |
table.sh: detect ABSOLUTE PATH, and fix default or |
commitdiff tree tar/gz zip patch |
| 19-06-30 18:24 |
Marcelo Ponce |
adding reference to the RACS monitoring tool |
commitdiff tree tar/gz zip patch |
| 19-06-30 18:23 |
Marcelo Ponce |
set racs_montior.sh to be an executable |
commitdiff tree tar/gz zip patch |
| 19-06-30 18:22 |
Marcelo Ponce |
some important changes: detect absolute path (so m |
commitdiff tree tar/gz zip patch |
| 19-06-29 20:14 |
Marcelo Ponce |
adding the defs subdir to the tree |
commitdiff tree tar/gz zip patch |
| 19-06-29 20:13 |
Marcelo Ponce |
updting comments in countsReads.sh - minor fixes a |
commitdiff tree tar/gz zip patch |
| 19-06-28 19:09 |
Marcelo Ponce |
typo |
commitdiff tree tar/gz zip patch |
| 19-06-28 18:52 |
Marcelo Ponce |
renaming motifs templates to defns |
commitdiff tree tar/gz zip patch |
| 19-06-28 18:51 |
Marcelo Ponce |
updating list of critical files of the pipeline to |
commitdiff tree tar/gz zip patch |
| 19-06-28 18:39 |
Marcelo Ponce |
adding a comment about the PATH variable so that c |
commitdiff tree tar/gz zip patch |
| 19-06-28 18:33 |
Marcelo Ponce |
adding some messages to display in screen to let t |
commitdiff tree tar/gz zip patch |
| 19-06-28 18:26 |
Marcelo Ponce |
adding checks to the script that gets the data for |
commitdiff tree tar/gz zip patch |
| 19-06-28 18:25 |
Marcelo Ponce |
giving executable permsission to the function for |
commitdiff tree tar/gz zip patch |
| 19-06-28 18:22 |
Marcelo Ponce |
modifying the errMsg() fn so it doesn't exit the t |
commitdiff tree tar/gz zip patch |
| 19-06-28 18:20 |
Marcelo Ponce |
adding a few more examples and how to cite RACS to |
commitdiff tree tar/gz zip patch |
| 19-06-28 17:28 |
Marcelo Ponce |
fixing the memory monitoring fn so it also works i |
commitdiff tree tar/gz zip patch |
| 19-06-28 17:27 |
Marcelo Ponce |
a more propper comment |
commitdiff tree tar/gz zip patch |
| 19-06-28 16:00 |
Marcelo Ponce |
adding an monitoring script as a tool to observe R |
commitdiff tree tar/gz zip patch |
| 19-06-28 14:39 |
Marcelo Ponce |
adding a couple of auxiliary files to download pub |
commitdiff tree tar/gz zip patch |
| 19-06-23 19:48 |
Marcelo Ponce |
renaming defns dir to 'motifs' |
commitdiff tree tar/gz zip patch |
| 19-06-23 17:51 |
Marcelo Ponce |
adding the terms and filters defns used in table.s |
commitdiff tree tar/gz zip patch |
| 19-06-23 17:50 |
Marcelo Ponce |
inlcuding aux e integrity fns |
commitdiff tree tar/gz zip patch |
| 19-06-23 17:43 |
Marcelo Ponce |
adding terms defns to list of files to check |
commitdiff tree tar/gz zip patch |
| 19-06-23 17:42 |
Marcelo Ponce |
several modifications to table.sh so it can be gen |
commitdiff tree tar/gz zip patch |
| 19-06-22 20:22 |
Marcelo Ponce |
wrapping lines in the citations section of the REA |
commitdiff tree tar/gz zip patch |
| 19-06-22 20:17 |
Marcelo Ponce |
making the name of the TMP files include the file |
commitdiff tree tar/gz zip patch |
| 19-06-22 20:13 |
Marcelo Ponce |
adding comments and details about 'FILTERS \& SELE |
commitdiff tree tar/gz zip patch |
| 19-06-22 19:49 |
Marcelo Ponce |
adding some clarifying comments and new variables |
commitdiff tree tar/gz zip patch |
| 19-06-20 19:06 |
Marcelo Ponce |
adding a new section of CITATIONS to refer to pape |
commitdiff tree tar/gz zip patch |
| 19-06-20 18:59 |
Marcelo Ponce |
adding the 'REQUIREMENTS' title |
commitdiff tree tar/gz zip patch |
| 19-06-06 13:51 |
Marcelo Ponce |
using an environment file to set env.variables to |
commitdiff tree tar/gz zip patch |
| 19-06-05 21:21 |
Marcelo Ponce |
fixing error messages for countReads.sh |
commitdiff tree tar/gz zip patch |
| 19-06-05 19:18 |
Marcelo Ponce |
generalizing the PBS submission script example by |
commitdiff tree tar/gz zip patch |
| 19-06-05 19:15 |
Marcelo Ponce |
generalizing the SLURM submission script example b |
commitdiff tree tar/gz zip patch |
| 19-04-28 23:07 |
Marcelo Ponce |
setup file for installing required packages for th |
commitdiff tree tar/gz zip patch |
| 19-04-28 22:11 |
Marcelo Ponce |
updating the Checking/Loading package function to |
commitdiff tree tar/gz zip patch |
| 19-03-22 19:48 |
Marcelo Ponce |
adding one comment about filters... |
commitdiff tree tar/gz zip patch |
| 19-03-22 19:47 |
Marcelo Ponce |
minor correction to GIT-repo URL |
commitdiff tree tar/gz zip patch |
| 19-03-16 18:33 |
Marcelo Ponce |
minor typo in help text |
commitdiff tree tar/gz zip patch |
| 19-03-16 18:28 |
Marcelo Ponce |
updating the README file with some missing section |
commitdiff tree tar/gz zip patch |
| 19-03-11 20:02 |
Marcelo Ponce |
Merge branch 'master' of gitrepos.scinet.utoronto. |
commitdiff tree tar/gz zip patch |
| 19-03-11 19:44 |
Marcelo Ponce |
final touches |
commitdiff tree tar/gz zip patch |
| 19-03-11 19:20 |
Marcelo Ponce |
Version 1.0, MArch 2019 |
commitdiff tree tar/gz zip patch |
| 19-02-14 16:00 |
Marcelo Ponce |
Starting project 'RACS': RACS: Rapid Analysis of C |
commitdiff tree tar/gz zip patch |
| 19-01-30 19:28 |
Marcelo Ponce |
Starting project 'RACS': RACS: Rapid Analysis of C |
commitdiff tree tar/gz zip patch |
