:78 Function create_function() is deprecated [8192]
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diff --git a/README b/README index 57c643d..d1cc799 100644 --- a/README +++ b/README @@ -510,10 +510,39 @@ IV.iv) Full analysis of Oxytricha trifallax V) comparison to MACS and Other Tools - --- in prep. --- + In order to compare RACS results vs MACS, we provide an R script that +does that generating some visuals comparisons. + Please notice that this tool is still under development. + V.1) First start by checking that the necessary packages are installed, + PATHtoRACSrepo/tools/Rscript setup.R + + V.2) Using the tool from an R session: + V.2-i) launch R + + V.2-i) source the "compare.R" file + + source("PATHtoRACSrepo/tools/compare.R") + + + V.2-ii) Now, you have a list of functions and datasets laoded ready to +be used, including some tests cases: + + ls() + + [1] "comparison" "comparison.ALL" "ibdX" "load.data" + [5] "loadCheckPkg" "macsIBD1" "macsIBD2" "overlap" + [9] "sample1" "sample2" "sampleIBD1" "sampleIBD2" +[13] "tests" "vizDiffs" + +For instance, 'sampleIBD1/sampleIBD2' are ORF generated with RACS, while +'macsIBD1/macsIBD2' are the results obtained with MACS2. + V.2-iii) Now you could use the ibdX() function to compare each of them, +eg. + ibdX(sampleIBD1,macsIBD1, "comparison_ibd1.pdf") + * CITATIONS