:78 Function create_function() is deprecated [8192]

one more defn file for TT using gened and mRNA

Marcelo Ponce [2019-07-19 17:10:55]
one more defn file for TT using gened and mRNA
Filename
core/defns/TT_gene-mRNA.id
diff --git a/core/defns/TT_gene-mRNA.id b/core/defns/TT_gene-mRNA.id
new file mode 100755
index 0000000..e0b49a7
--- /dev/null
+++ b/core/defns/TT_gene-mRNA.id
@@ -0,0 +1,42 @@
+#####################################################################
+#####################################################################
+## The following two sections:
+##
+##		"FILTERS AND DELIMITERS"
+##
+##	and
+##
+##		"SELECTIONS"
+##
+## should be determine depending on the particular organism, protein,
+## genes (ie. target) and data layout of the specific file to be
+## processed.
+##
+## Here we present the case for:
+##	 Tetrahymena Thermophila  &  mRNA and genes
+#####################################################################
+#####################################################################
+
+
+############  CASE FOR TETRAHYMENA THERMOPHILA  #####################
+################# FILTERS AND DELIMITERS ############################
+# filterS can be modified/added depending on the "TARGET" organism and 'protein'
+filter1="gene"
+filter2="Name="
+# and one could keep addingg further 'filters' if needed...
+# filter3='"hypothetical protein"'
+# ...
+
+# Eg.
+# TARGET=$(grep $filter1 $FILE | grep $filter2)
+#
+# grep $filter1 $FILE | grep $filter2 | awk '{print $1":"$4"-"$5"  "$9}
+
+
+# define some delimiters...
+delim1="Name="
+delim2=";Note"
+delim3="Note="
+
+######################################################################
+#######################################################################
ViewGit