:78 Function create_function() is deprecated [8192]
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datasets/get_OXYchIPseq-files.sh |
diff --git a/datasets/get_OXYchIPseq-files.sh b/datasets/get_OXYchIPseq-files.sh index 55296ab..400ab2b 100755 --- a/datasets/get_OXYchIPseq-files.sh +++ b/datasets/get_OXYchIPseq-files.sh @@ -36,11 +36,14 @@ checkTools fastq-dump gzip srxFiles="SRX483016 SRX483017" # download fastq files +echo "starting to download files using fastq-dump..." for i in $srxFiles; do + echo "accessing $i file ... "; fastq-dump -I --split-files $i done # generate fastq.gz files +echo "Compressing files..." for i in *fastq; do echo $i ; gzip -c $i > $i.gz ;