:78 Function create_function() is deprecated [8192]
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tools/compare.R |
diff --git a/tools/compare.R b/tools/compare.R index 3ecd06b..9715a63 100644 --- a/tools/compare.R +++ b/tools/compare.R @@ -196,19 +196,19 @@ comparison <- function(sample1,sample2, DBG=TRUE) { if (dsset1 == 0) { if (DBG) { - # not data registered for this scaffold in sample1 - cat("not data registered for this scaffold:",scfld," in sample1",'\n') - print(sset1) - print(sset2) + # not data registered for this scaffold in sample1 + cat("not data registered for this scaffold:",scfld," in sample1",'\n') + print(sset1) + print(sset2) } tmpreg <- c(as.character(scfld),"--","--", sset2$start,sset2$end, as.numeric(-1)) if (DBG) print(tmpreg) results <- rbind(results, as.character(tmpreg)) } else if (dsset2 == 0 ) { if (DBG) { - cat("not data registered for this scaffold:",scfld," in sample2",'\n') - print(sset1) - print(sset2) + cat("not data registered for this scaffold:",scfld," in sample2",'\n') + print(sset1) + print(sset2) } tmpreg <- c(as.character(scfld),"--","--", sset1$start,sset1$end, as.numeric(+1)) if (DBG) print(tmpreg)