:78 Function create_function() is deprecated [8192]
Filename | |
---|---|
README |
diff --git a/README b/README index 9b61e95..1724bda 100644 --- a/README +++ b/README @@ -1,4 +1,5 @@ RACS: Rapid Analysis of ChIP-Seq data for contig based genomes +==== -------------------------------------------------------- These tools are a series of scripts developed to facilitate the analysis of ChIP-Seq data and has been applied to the organism T. thermophila. @@ -161,6 +162,8 @@ If either one of the dependencies is not meet an error message describing the is followed by the basic instructions in how to use RACS. +------------------------------------------------------------------------------- + * HOW TO USE THE 'racs' PIPELINE: @@ -380,8 +383,11 @@ The main functionalities offered are: More concrete examples and uses are presented in the examples section below. +------------------------------------------------------------------------------- + * EXAMPLES + I) calling peaks for ORF I.i) the following command will run the countReads.sh script using: - 'data2/_1_MED1_INPUT_S25_L007_R1_001.fasta.gz' as the file with the INPUT reads @@ -617,6 +623,7 @@ for generating additional interactive visualizations that will be saved in HTML documents that can be open in a web browser for interactive exploration. +------------------------------------------------------------------------------- * CITATIONS @@ -644,3 +651,4 @@ Publications where RACS has been used: https://doi.org/10.1186/s13072-018-0180-6 +-------------------------------------------------------------------------------