:78 Function create_function() is deprecated [8192]
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datasets/get_OXYchIPseq-files.sh |
diff --git a/datasets/get_OXYchIPseq-files.sh b/datasets/get_OXYchIPseq-files.sh index 400ab2b..599c0dc 100755 --- a/datasets/get_OXYchIPseq-files.sh +++ b/datasets/get_OXYchIPseq-files.sh @@ -1,13 +1,14 @@ #!/bin/bash -# Tool for download Oxytrichia data from NCBI_SRA +# Tool for downloading "Oxytrichia" data from NCBI_SRA # This script is part of # RACS v1.0 (2018/2019) -- Open source tools for Analizing ChIP-Seq data # It requires the "NCBI SRA (Sequence Read Archive)" to download the data # whcioh can be obtained from https://github.com/ncbi/sra-tools -# set PATH to add "SRA toolkit" +# if it is not part of your PATH, you can use this to add the location +# where "SRA toolkit" is installed so it can be used to download the NCBI data PATH=$PATH:/scratch1/mponce/RESEARCH/Tetrahymena_Ryerson/TOOLS/NCBI_SRA_toolkit/sratoolkit.2.9.6-1-ubuntu64/bin ####################################################### @@ -49,3 +50,4 @@ for i in *fastq; do gzip -c $i > $i.gz ; done +