:78 Function create_function() is deprecated [8192]
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diff --git a/README b/README index 2f4a236..80da78c 100644 --- a/README +++ b/README @@ -492,9 +492,9 @@ IV.iv) Full analysis of Oxytricha trifallax # 2) use the auxiliary tools we provide to download the datasets for Oxytricha trifallax # 2.i) first the reference genome - PATHtoRACSrepo/datasets/get.... + PATHtoRACSrepo/datasets/get_GFF3-files.sh # 2.ii) now the ChIP-seq data, you will the NCBI-SRA toolkit for this step! - PATHtoRACS/repo/datasets/get... + PATHtoRACS/repo/datasets/get_OXYchIPseq-files.sh # 3) determination of ORFs with RACS PATHtoRACSrepo/core/countReads.sh SRX483016_1.fastq.gz SRX483017_1.fastq.gz Oxytricha_trifallax_022112_assembly.fasta Oxytricha_trifallax_022112.gff3 /dev/shm/ 16 PATHtoRACS/core/defns/OXY_gene.idf