:78 Function create_function() is deprecated [8192]
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diff --git a/README b/README index 386bd06..51161ff 100644 --- a/README +++ b/README @@ -105,12 +105,16 @@ RACS | âââ test | âââ lst âââ datasets - |  âââ PostProcessing_Genic.xlsx - |  âââ PostProcessing_Intergenic.xlsx - | âââ IBD1_ORF.xlsx - |  âââ IBD1_Intergenic.xlsx - | +-- get_GFF3-files.sh - | +-- get_OXYchIPseq-files.sh + |  âââ TET_PostProcessing_MAC_Genome_Genic.xlsx + |  âââ TET_PostProcessing_MAC_Genome_Intergenic.xlsx + |  âââ TET_Ibd1_MAC_Genome_Genic.xlsx + |  âââ TET_Ibd1_MAC_Genome_Intergenic.xlsx + | âââ TET_Ibd1_rDNA_Genic.xlsx + | âââ TET_Ibd1_rDNA_Intergenic.xlsx + | âââ OXY_Rpb1_MAC_Genome_Genic.xlsx + |  âââ OXY_Rpb1_MAC_Genome_Intergenic.xlsx + | âââ get_GFF3-files.sh + | âââ get_OXYchIPseq-files.sh âââ hpc â  âââ submission.pbs |  âââ submission.slurm @@ -535,8 +539,20 @@ It requires 3 arguments: Alternatively one could use a couple of spreadsheets available in the 'datasets' directory, if the user prefers to proceed in an interactive manner. See, - datasets/PostProcessing_Genic.xlsx - datasets/PostProcessing_Intergenic.xlsx + datasets/TET_PostProcessing_MAC_Genome_Genic.xlsx + datasets/TET_PostProcessing_MAC_Genome_Intergenic.xlsx + +We have also included, specific examples of these applied to some of the cases +we have analized using RACS, ie. +- for Tetrahymena thermophila: + TET_Ibd1_MAC_Genome_Genic.xlsx + TET_Ibd1_MAC_Genome_Intergenic.xlsx + TET_Ibd1_rDNA_Genic.xlsx + TET_Ibd1_rDNA_Intergenic.xlsx + +- for Oxytricha trifallax: + OXY_Rpb1_MAC_Genome_Genic.xlsx + OXY_Rpb1_MAC_Genome_Intergenic.xlsx IV) Processing generic organisms/terms, other than Tetrahymena thermophila