:78 Function create_function() is deprecated [8192]
Filename | |
---|---|
README | |
core/countReads.sh |
diff --git a/README b/README index 8c9343f..1b77625 100644 --- a/README +++ b/README @@ -460,7 +460,7 @@ Please cite our paper (CITE_RACS) when ever you are using RACS. Main paper to cite about RACS: - "RACS: Rapid Analysis of ChIP-Seq data for contig based genomes", - Ponce et al., BMC in press. + Ponce et al., BMC under review. Publications where RACS has been used: diff --git a/core/countReads.sh b/core/countReads.sh index 8700e31..0d4f325 100755 --- a/core/countReads.sh +++ b/core/countReads.sh @@ -39,7 +39,7 @@ fi scriptDIR=`dirname $0` # get the absolute path of RACS... scriptsDIR=$( cd "${scriptDIR}" && pwd ) -echo "RACS location... ${scriptsDIR}" +echo "RACS location --> ${scriptsDIR}" # load auxiliary fns for integrity checks and message/error handling if [[ -f $scriptsDIR/auxs/auxFns.sh ]]; then @@ -123,7 +123,7 @@ resultsDIR=$myDIR/ORF_RACS_results-`date '+%Y%m%d-%H%M%S'` #`date +%D-%T` ## -.-.-.- ORGANISM=${7:-"${scriptsDIR}/defns/TT_gene.id"} -echo "###>>> '${ORGANISM}' to process..." +echo "==>>> organism specified by '${ORGANISM}' to process..." checkFile $ORGANISM ORGfile=`basename $ORGANISM` ## -.-.-.-