:78 Function create_function() is deprecated [8192]

minor fix in citation in readme; clarifying msgs in countReads

Marcelo Ponce [2019-07-01 19:08:51]
minor fix in citation in readme; clarifying msgs in countReads
Filename
README
core/countReads.sh
diff --git a/README b/README
index 8c9343f..1b77625 100644
--- a/README
+++ b/README
@@ -460,7 +460,7 @@ Please cite our paper (CITE_RACS) when ever you are using RACS.

 Main paper to cite about RACS:
 - "RACS: Rapid Analysis of ChIP-Seq data for contig based genomes",
-  Ponce et al., BMC in press.
+  Ponce et al., BMC under review.


 Publications where RACS has been used:
diff --git a/core/countReads.sh b/core/countReads.sh
index 8700e31..0d4f325 100755
--- a/core/countReads.sh
+++ b/core/countReads.sh
@@ -39,7 +39,7 @@ fi
 scriptDIR=`dirname $0`
 # get the absolute path of RACS...
 scriptsDIR=$( cd "${scriptDIR}" && pwd )
-echo "RACS location... ${scriptsDIR}"
+echo "RACS location --> ${scriptsDIR}"

 # load auxiliary fns for integrity checks and message/error handling
 if [[ -f $scriptsDIR/auxs/auxFns.sh ]]; then
@@ -123,7 +123,7 @@ resultsDIR=$myDIR/ORF_RACS_results-`date '+%Y%m%d-%H%M%S'`	#`date +%D-%T`

 ## -.-.-.-
 ORGANISM=${7:-"${scriptsDIR}/defns/TT_gene.id"}
-echo "###>>> '${ORGANISM}' to process..."
+echo "==>>> organism specified by  '${ORGANISM}'  to process..."
 checkFile $ORGANISM
 ORGfile=`basename $ORGANISM`
 ## -.-.-.-
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